Popular GitHub Repositories for Microscopy

cuCIM - RAPIDS GPU-accelerated image processing library

CellViT: Vision Transformers for Precise Cell Segmentation and Classification

Encoder-Decoder Cell and Nuclei segmentation models

Official repo for Recursion's accepted spotlight paper at NeurIPS 2023 Generative AI & Biology workshop.

Code for my master's thesis. Instance segmentation of fluorescence microscopy images with deep learning.

Multi-modal Image Registration And Connectivity anaLysis

Easy Volumetric Segmentation with Deep Learning

Accurate segmentation of bacterial microscope images using deep learning synthetically generated image data.

[WACV 2024] AnyStar: Domain randomized universal star-convex 3D instance segmentation

ExTrack MLE for diffusive noisy single-particle tracks

Parameter Efficient Fine-Tuning of Segment Anything Model

Code Release for "MaskTerial: A Foundation Model for Automated 2D Material Flake Detection"

Semantic Segmention and Image2Image using DeepLearning ONNX models packaged as *.czann files.

Segmenting cells (and other objects!) in microscopy images via neural networks.

MMIR: Multimodal Image Registration

Self-supervised pretraining with CLInical COntext Multi-instance learning