seqviz

Democratizing Deep-Learning for Drug Discovery, Quantum Chemistry, Materials Science and Biology

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

Official code repository for GATK versions 4 and up

Therapeutics Commons (TDC-2): Multimodal Foundation for Therapeutic Science

Python and C++ code for reading and writing genomics data.

Implementation of Alpha Fold 3 from the paper: "Accurate structure prediction of biomolecular interactions with AlphaFold3" in PyTorch

Chainer Chemistry: A Library for Deep Learning in Biology and Chemistry

Chemical reaction network and systems biology interface for scientific machine learning (SciML). High performance, GPU-parallelized, and O(1) solvers in open source software.

A small, highly performant JavaScript component for parsing and drawing SMILES strings. Released under the MIT license.

Library for Digital Pathology Image Processing