Popular GitHub Repositories for Biomedical

A full spaCy pipeline and models for scientific/biomedical documents.

Visual Med-Alpaca is an open-source, multi-modal foundation model designed specifically for the biomedical domain, built on the LLaMa-7B.

Towards Generalist Biomedical AI

? A curated list of resources relevant to doing Biomedical Information Extraction (including BioNLP)

SleepEEGNet: Automated Sleep Stage Scoring with Sequence to Sequence Deep Learning Approach

BioGrakn Knowledge Graph

(NeurIPS 2022 CellSeg Challenge - 1st Winner) Open source code for "MEDIAR: Harmony of Data-Centric and Model-Centric for Multi-Modality Microscopy"

Recognize bio-medical entities from a text corpus

MedType: Improving Medical Entity Linking with Semantic Type Prediction

Named Entity Recognition with Small Strongly Labeled and Large Weakly Labeled Data

TypeDB Bio: Biomedical Knowledge Graph

Weakly supervised medical named entity classification

Improving Biomedical Pretrained Language Models with Knowledge [BioNLP 2021]

Code for the paper Biomedical Event Extraction with Hierarchical Knowledge Graphs

BioBART: Pretraining and Evaluation of A Biomedical Generative Language Model [ACL-BioNLP 2022]

A collaborative learning framework for empowering biomedical research

Medical Relations and Entities Extraction

Pytorch implementation of BiomedCLIP vision model with LoRA tuning

Official source for Spanish pretrained biomedical and clinical language models and resources made @ BSC-TEMU within the "Plan de las Tecnologías del Lenguaje" (Plan-TL).

[EMNLP 2024] This is the code for our paper "BMRetriever: Tuning Large Language Models as Better Biomedical Text Retrievers".