Popular GitHub Repositories for Cancer Genomics

Training and evaluating a variational autoencoder for pan-cancer gene expression data

Prognostically Relevant Subtypes and Survival Prediction for Breast Cancer Based on Multimodal Genomics Data

Benchmarking study of machine learning methods for prediction of synthetic lethality

The first GANs-based omics-to-omics translation framework

Data & Scripts for the Memorial Sloan Kettering Cancer Center's (MSKCC) request for a machine learning algorithm that, using annotated information on genomic variants, automatically classifies genetic variations as either neutral or cancerous.

PMKB bot for the Precision Medicine Knowledge Base using Microsoft Bot Framework.

End-to-end machine learning pipeline for cancer classification using genomic data from TCGA's API endpoints. Model is deployed on SageMaker and invoked with AWS Lambda for serverless inference. Frontend was created using NextJS and deployed on Vercel.

Probabilistic modeling of high-dimensional binary data in JAX

Proyecto de investigación en ML para identificar factores genéticos en pronóstico de lesiones pre-tumorales. Aprendizaje no supervisado para discernir perfiles genéticos distintivos entre grupos de buen y mal pronóstico, mejorando detección y tratamiento temprano del cáncer.