Popular GitHub Repositories for Proteins

Diffusion models of protein structure; trigonometry and attention are all you need!

EquiBind: geometric deep learning for fast predictions of the 3D structure in which a small molecule binds to a protein

Contextual AI models for single-cell protein biology

Inference code for PoET: A generative model of protein families as sequences-of-sequences

A geometric deep learning pipeline for predicting protein interface contacts. (ICLR 2022)

Biological prediction models made simple.

Prediction of binding residues for metal ions, nucleic acids, and small molecules.

ProCyon: A multimodal foundation model for protein phenotypes

Multimodal Pretraining for Unsupervised Protein Representation Learning

A bash script for an automated Rosetta Abinitio folding simulation on an HPC

Simple python interface for the OpenProtein.AI REST API.

? Fine-Tuning Large Language and Protein Models on a single T4 GPU via Distillation, Quantization and Low-Rank Adaptation to run inference on proteins functions.

This repository provides a Python implementation of the NapShift program to predict the backbone atoms' chemical shift values, from NMR protein PBD structures, using artificial neural networks.

Showcase of hemolytic activity prediction with Word2Vec features