Popular GitHub Repositories for Pubmed Abstracts

BlueBERT, pre-trained on PubMed abstracts and clinical notes (MIMIC-III).

A clinical BERT-based NLP tool for parsing clinical trial abstracts following the PICO framework

Tools to create a clinical knowledge graph from biomedical literature. Includes wrappers for NCBI Eutils, cTakes annotator and Neo4J

Paper Peek is a project based on Natural Language Processing which helps the medical professional to read abstracts from the Randomized controlled trials (RCTs) abstracts into sub sections such as Background, Objective etc.

Text Mining (PubMed Search) with NLP & LLM