Popular GitHub Repositories for Transcriptomics

Single cell perturbation prediction

UniTVelo, Temporally Unified RNA Velocity for single cell trajectory inference

空间转录组学人工智能代理绘制体内胰腺祖细胞成熟图谱

Source code and data for "Causal reasoning over knowledge graphs leveraging drug-perturbed and disease-specific transcriptomic signatures for drug discovery"

Generative models for transcriptomics profiles and proteins

Assessing the influence of training data composition on single-cell foundation model performance

MIRROR: Multi-Modal Pathological Self-Supervised Representation Learning via Modality Alignment and Retention