Popular GitHub Repositories for Transcriptomics

Single cell perturbation prediction

UniTVelo, Temporally Unified RNA Velocity for single cell trajectory inference

Source code and data for "Causal reasoning over knowledge graphs leveraging drug-perturbed and disease-specific transcriptomic signatures for drug discovery"

Generative models for transcriptomics profiles and proteins

MIRROR: Multi-Modal Pathological Self-Supervised Representation Learning via Modality Alignment and Retention

Assessing the influence of training data composition on single-cell foundation model performance