STHD

A curated list of awesome Bioinformatics libraries and software.

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

The OCR approach is rephrased as Segmentation Transformer: https://arxiv.org/abs/1909.11065. This is an official implementation of semantic segmentation for HRNet. https://arxiv.org/abs/1908.07919

A DSL for data-driven computational pipelines

Single-cell analysis in Python. Scales to >100M cells.

[CVPR 2022--Oral] Restormer: Efficient Transformer for High-Resolution Image Restoration. SOTA for motion deblurring, image deraining, denoising (Gaussian/real data), and defocus deblurring.

Let us democratise high-resolution generation! (CVPR 2024)

Integrated Computational Biology Data Analysis Environment

Official code repository for GATK versions 4 and up

A full spaCy pipeline and models for scientific/biomedical documents.