Popular GitHub Repositories for Spatial Transcriptomics

Knowledge-graph-based cell-cell communication inference for spatially resolved transcriptomic data

a cutting-edge cell segmentation model specifically designed for single-molecule resolved spatial omics datasets. It addresses the challenge of accurately segmenting individual cells in complex imaging datasets, leveraging a unique approach based on graph neural networks (GNNs).

Splotch is a hierarchical generative probabilistic model for analyzing Spatial Transcriptomics (ST) data

STHD: probabilistic cell typing of Single spots in whole Transcriptome spatial data with High Definition